chore: cite docs/BUGS.md and drop references to notes outside the repo

66 comments cited `bugs.md B<n>`, the ledger's old name; they now say
`docs/BUGS.md B<n>`, and every cited number has an entry. About 90 more
cited offline.md, devices.md, features.md, mount-architecture.md,
plan.md and improvements.md, planning notes that were never in the
repository. Those citations are removed; the comments keep their text.

crates/pdfs-core/src/cache.rs

@@ -91,7 +91,7 @@ const TOUCH_FLUSH_AT: usize = 256;
 ///
 /// Public because it is the *contract* a block has to satisfy, not a detail of
 /// this cache: the network read path validates against it too, so a block that
-/// comes back short is refused before it can truncate a file (bugs.md B84).
+/// comes back short is refused before it can truncate a file (`docs/BUGS.md` B84).
 pub fn block_len(size: u64, idx: u64) -> u64 {
     let start = idx.saturating_mul(BLOCK_SIZE);
     size.saturating_sub(start).min(BLOCK_SIZE)
@@ -311,8 +311,7 @@ struct PinFile {
     pins: BTreeMap<String, Pin>,
 }
 
-/// What a staged file actually contains, written beside it as `<name>.json`
-/// (offline.md Phase 2).
+/// What a staged file actually contains, written beside it as `<name>.json`.
 ///
 /// A staged file is **not** necessarily valid whole-file content, and that is
 /// the whole reason this exists. A partial overwrite commits by filling the
@@ -439,9 +438,9 @@ pub struct ContentCache {
     /// Subdirectory for write-handle scratch files (disk-backed write buffers).
     /// Emptied on open so a crashed run leaves no orphans.
     scratch_dir: PathBuf,
-    /// Subdirectory holding the bytes of writes that have not been uploaded yet
-    /// (offline.md Phase 2/3) — every released write passes through here, since
-    /// the upload is a queued op performed later. Unlike `scratch_dir` this is
+    /// Subdirectory holding the bytes of writes that have not been uploaded yet.
+    /// Every released write passes through here, since the upload is a queued
+    /// op performed later. Unlike `scratch_dir` this is
     /// **never** emptied on open: these are the only copy of content the user
     /// authored, and the whole point is that they outlive the daemon.
     staging_dir: PathBuf,
@@ -476,7 +475,7 @@ pub struct ContentCache {
     thumb_bytes: AtomicU64,
     /// Unified metadata DB. Its `cache_entries` table is the LRU index: every
     /// store/read/evict updates it, and the budget enforcers query it instead of
-    /// scanning the cache directories (plan.md P4).
+    /// scanning the cache directories.
     db: Arc<Db>,
     /// LRU touches not yet written to `cache_entries`, keyed by cache key.
     ///
@@ -989,7 +988,7 @@ impl ContentCache {
     /// a miss ([`cached_block`](Self::cached_block) checks), so a bad block
     /// cannot escape this cache even though this does not check. Validating a
     /// block is the *reader's* job, at the point it is fetched — see
-    /// `Core::read_block` (bugs.md B84).
+    /// `Core::read_block` (`docs/BUGS.md` B84).
     pub fn store_block(
         &self,
         uid: &NodeUid,
@@ -1491,9 +1490,8 @@ impl ContentCache {
     /// This is what makes a write survive its upload: the caller is releasing a
     /// write handle and would otherwise delete the file, so until the bytes are
     /// on the remote, staging holds the only copy. Every dirty handle goes
-    /// through here — the upload is a queued op performed later (offline.md
-    /// Phase 3), and a staged file is also what a human can recover from if the
-    /// queue never drains.
+    /// through here — the upload is a queued op performed later, and a staged
+    /// file is also what a human can recover from if the queue never drains.
     ///
     /// Falls back to a copy when the rename crosses a filesystem boundary; a
     /// failure here means we could not save the bytes at all, so it is reported
@@ -2707,7 +2705,7 @@ mod tests {
     }
 
     /// The geometry the whole read path validates against, here and over the
-    /// network (bugs.md B84): full blocks, then whatever is left.
+    /// network (`docs/BUGS.md` B84): full blocks, then whatever is left.
     #[test]
     fn block_len_is_full_blocks_then_the_remainder() {
         let size = BLOCK_SIZE * 2 + 17;
@@ -2787,7 +2785,7 @@ mod tests {
     /// A cached block is addressed by the range it covers, not by its index
     /// alone. Re-planning a file onto its real geometry must therefore miss the
     /// blocks the uniform fallback cached, rather than serve their bytes at the
-    /// wrong offset (bugs.md B85).
+    /// wrong offset (`docs/BUGS.md` B85).
     #[test]
     fn a_cached_block_is_not_served_to_a_different_geometry() {
         let (c, _d) = cache();
@@ -2854,7 +2852,7 @@ mod tests {
 
     /// A block of the wrong length cannot escape the cache even though the
     /// store does not check: the read validates it and reports a miss, so the
-    /// next read refetches rather than serving a hole (bugs.md B84).
+    /// next read refetches rather than serving a hole (`docs/BUGS.md` B84).
     #[test]
     fn a_block_of_the_wrong_length_reads_as_a_miss() {
         let (c, _d) = cache();
@@ -2919,7 +2917,7 @@ mod tests {
         );
     }
 
-    /// A failed upload must never cost the user their bytes (offline.md Phase 2):
+    /// A failed upload must never cost the user their bytes:
     /// the scratch file moves to staging intact, and staging survives a reopen
     /// the way scratch deliberately does not.
     #[test]

crates/pdfs-core/src/config.rs

@@ -432,7 +432,7 @@ impl AppDirs {
     /// typical umask makes them `0755`. Until this was fixed, the only thing
     /// keeping another local user out was `~/.cache` and `~/.local/state`
     /// happening to be `0700`, which is a convention of the user's system and
-    /// not something this client established (bugs.md B6).
+    /// not something this client established (`docs/BUGS.md` B6).
     ///
     /// Applied on every start, not just at creation: a directory that already
     /// exists with a permissive mode — restored from a backup that flattened
@@ -483,7 +483,7 @@ fn restrict_dir(dir: &Path) -> Result<()> {
 /// session — enumerate, read, upload, trash, share — without presenting any
 /// credential, since the daemon already holds one. It is an authority boundary,
 /// not merely private data, and `UnixListener::bind` applies the umask like any
-/// other file (bugs.md B6).
+/// other file (`docs/BUGS.md` B6).
 ///
 /// There is a window between `bind` and this call during which the socket
 /// carries the umask's mode. It is closed in practice by the containing
@@ -504,7 +504,7 @@ mod tests {
         std::fs::metadata(p).unwrap().permissions().mode() & 0o777
     }
 
-    /// bugs.md B6. A permissive mode here is not a cosmetic problem: these
+    /// `docs/BUGS.md` B6. A permissive mode here is not a cosmetic problem: these
     /// directories hold decrypted content, a plaintext index of every node name,
     /// and the control socket that commands the daemon's session.
     #[test]

crates/pdfs-core/src/control.rs

@@ -443,11 +443,11 @@ pub enum Request {
     DeleteDevice { uid: String },
     /// Adopt an existing device as this machine's, pinning its uid in
     /// `config.json` so a hostname change or reinstall re-attaches to it instead
-    /// of registering a duplicate (features.md 5.1). `uid: None` clears the pin.
+    /// of registering a duplicate. `uid: None` clears the pin.
     /// Replies with [`Response::Ok`].
     AdoptDevice { uid: Option<String> },
 
-    // ---- device folder sync (devices.md) ----------------------------------
+    // ---- device folder sync ----------------------------------
     /// Add a local folder to this machine's device, uploading its tree and
     /// registering the device on first use. Replies with [`Response::Ok`].
     AddSyncFolder { local_path: String },
@@ -496,7 +496,7 @@ pub enum Request {
     /// [`Response::Ok`].
     ResolveConflict { path: String, keep: ConflictKeep },
     /// List the folders under this machine's device that can be synced here,
-    /// each with a proposed local path (features.md 5.2). Replies with
+    /// each with a proposed local path. Replies with
     /// [`Response::RestorableFolders`].
     ListRestorableFolders,
     /// Attach the given remote device folders to local paths and sync them down.
@@ -1903,17 +1903,17 @@ pub enum Response {
         /// The pin registry.
         pins: Vec<Pin>,
         /// False when the daemon is serving the cached tree because the API is
-        /// unreachable (offline.md Phase 1). Cached and pinned content still
+        /// unreachable. Cached and pinned content still
         /// reads; anything else fails until the network is back.
         #[serde(default = "default_online")]
         online: bool,
-        /// Writes accepted locally but not yet uploaded (offline.md Phase 3).
+        /// Writes accepted locally but not yet uploaded.
         /// Non-zero means the mount is ahead of the remote — either a copy is
         /// still draining, or it cannot drain because we are offline.
         #[serde(default)]
         pending_uploads: u64,
-        /// Queued mutations that carry no bytes: `mkdir`, `rename`, `trash`
-        /// (offline.md Phase 3b). Counted apart from `pending_uploads` because
+        /// Queued mutations that carry no bytes: `mkdir`, `rename`, `trash`.
+        /// Counted apart from `pending_uploads` because
         /// calling a queued `mkdir` an upload is a lie.
         #[serde(default)]
         pending_changes: u64,

crates/pdfs-core/src/db/maintenance.rs

@@ -1,4 +1,4 @@
-//! Database health reporting and repair (features.md 4.3).
+//! Database health reporting and repair.
 //!
 //! Everything here exists for the case where something has already gone wrong:
 //! a crash mid-write, a full disk, a cache that has grown out of proportion to

crates/pdfs-core/src/db/migrations.rs

@@ -577,7 +577,7 @@ CREATE TABLE trash (
 );
 ";
 
-/// Schema v8: device sync (devices.md). This machine registers as one Proton Drive
+/// Schema v8: device sync. This machine registers as one Proton Drive
 /// **Device** (a share + root folder on the main volume); `device` is a singleton
 /// row cached so we reuse the same device across restarts instead of creating a
 /// new one each run. `sync_folder` is one row per local folder the user added,
@@ -638,8 +638,8 @@ ALTER TABLE sync_folder ADD COLUMN pending_mode TEXT;
 ";
 
 /// Schema v11: writes no longer upload inside the FUSE handler. `release` stages
-/// the bytes and records the intended upload here, and a drain worker performs it
-/// (offline.md Phase 3). The row outlives the process, so a write survives both a
+/// the bytes and records the intended upload here, and a drain worker performs it.
+/// The row outlives the process, so a write survives both a
 /// dead network and a restart.
 ///
 /// `blob_path` points into the content cache's `staging/` dir and `meta_json` is
@@ -666,7 +666,7 @@ CREATE INDEX pending_op_uid ON pending_op(uid);
 
 /// Schema v12: `pending_op` also carries mutations that *create* a node, which a
 /// revision op never had to describe — it always addressed a node the server had
-/// already minted a uid for (offline.md Phase 3b).
+/// already minted a uid for.
 ///
 /// An offline `create`/`mkdir` cannot get a real uid, so the node is invented
 /// locally under a `local~<uuid>` placeholder and the op records where it goes
@@ -1056,7 +1056,7 @@ ALTER TABLE pending_op ADD COLUMN access_deferred_since INTEGER NOT NULL DEFAULT
 /// as the last sync and left the file the same length — a fixed-size record
 /// rewritten, an image re-exported, a database page updated in place — read as
 /// *unchanged* and was never uploaded. The remote copy silently stayed at the
-/// older content until something else about the file moved (bugs.md B25).
+/// older content until something else about the file moved (`docs/BUGS.md` B25).
 ///
 /// Nullable rather than a converted `local_mtime * 1_000_000_000`: the
 /// nanosecond part of an existing baseline is genuinely unknown, and inventing

crates/pdfs-core/src/db/nodes.rs

@@ -568,8 +568,7 @@ impl Db {
     }
 
     /// Load one persisted node back by uid. Used to recover the My Files root
-    /// when the API is unreachable, so the mount can still serve the cached tree
-    /// (offline.md Phase 1).
+    /// when the API is unreachable, so the mount can still serve the cached tree.
     pub fn node_by_uid(&self, uid: &str) -> Result<Option<Node>> {
         let conn = self.read();
         let json: Option<String> = conn

crates/pdfs-core/src/db/ops.rs

@@ -15,7 +15,7 @@ use crate::Result;
 pub const OP_REVISION: &str = "revision";
 
 /// The `kind` of a [`PendingOp`] that creates a file that so far exists only
-/// locally, under a `local:` placeholder uid (offline.md Phase 3b).
+/// locally, under a `local:` placeholder uid.
 ///
 /// The written bytes ride along on the same row rather than as a follow-on
 /// [`OP_REVISION`]: draining the create mints the node's real uid, which would
@@ -29,7 +29,7 @@ pub const OP_CREATE: &str = "create";
 pub const OP_MKDIR: &str = "mkdir";
 
 /// The `kind` of a [`PendingOp`] that gives a node a new name, a new parent, or
-/// both — the queued form of `mv` (offline.md Phase 3b).
+/// both — the queued form of `mv`.
 ///
 /// `parent_uid` and `name` hold the node's *desired end state*, not a delta, so
 /// a second rename simply replaces the row (see [`Db::enqueue_op`]) and the
@@ -55,8 +55,7 @@ pub struct RenameMeta {
     pub original_name: Option<String>,
 }
 
-/// The `kind` of a [`PendingOp`] that trashes a node the server knows about
-/// (offline.md Phase 3b).
+/// The `kind` of a [`PendingOp`] that trashes a node the server knows about.
 ///
 /// A node that only ever existed locally never gets one of these: there is
 /// nothing to trash remotely, so deleting it just drops its queued ops
@@ -311,7 +310,7 @@ pub const PARK_UNTIL: i64 = 8_000_000_000_000;
 pub const PARK_EXPIRY_MS: i64 = 60 * 60 * 1000;
 
 /// A mutation that has been accepted locally but not yet performed against the
-/// API — the durable half of the write-back queue (offline.md Phase 3).
+/// API — the durable half of the write-back queue.
 ///
 /// The daemon answers the FUSE call the moment this row and its staged blob are
 /// on disk, so a `cp` into the mount runs at disk speed and the upload happens
@@ -887,7 +886,7 @@ impl Db {
     /// make — the node is still only a queued intent, and rewriting that intent
     /// *is* the rename. Returns false when the create has already drained, in
     /// which case the node has a real uid and the caller must rename it there
-    /// instead (offline.md Phase 3b).
+    /// instead.
     ///
     /// A create backing off is made due: what it failed on may have been the
     /// name it no longer wants, such as one held by a queued change. A parked

crates/pdfs-core/src/db/sync.rs

@@ -25,8 +25,8 @@ pub struct StoredSyncFolder {
 }
 
 /// One per-file sync baseline row: what a path looked like on both sides at the
-/// last successful sync, so the next reconcile can tell which side changed
-/// (devices.md Phase 2). `remote_rev`/`remote_hash` hold the remote signature —
+/// last successful sync, so the next reconcile can tell which side changed.
+/// `remote_rev`/`remote_hash` hold the remote signature —
 /// its modification time and size as strings — since no cheap content hash is
 /// exposed; change detection is `(mtime, size)` on each side.
 #[derive(Clone, Debug, PartialEq)]
@@ -39,7 +39,7 @@ pub struct StoredSyncEntry {
     ///
     /// `local_mtime` alone cannot tell an edit that landed inside the same
     /// second as the last sync — and left the file the same length — from no
-    /// edit at all, so those never uploaded (bugs.md B25). `None` on a row
+    /// edit at all, so those never uploaded (`docs/BUGS.md` B25). `None` on a row
     /// written before schema 28, which the comparison reads as "compare whole
     /// seconds", so upgrading does not make an entire mirror look changed.
     pub local_mtime_ns: Option<i64>,
@@ -345,7 +345,7 @@ impl Db {
     /// Drop the entire baseline for a folder. Used when flipping ondemand→mirror:
     /// the local tree was evicted, so the old baseline is stale and would make the
     /// next reconcile mistake "locally deleted" for "must re-download". Clearing it
-    /// leaves an empty baseline + full remote = pure download (devices.md P3).
+    /// leaves an empty baseline + full remote = pure download.
     pub fn sync_entries_clear(&self, folder_id: i64) -> Result<()> {
         let conn = self.conn.lock();
         conn.execute(

crates/pdfs-core/src/db/tests.rs

@@ -675,8 +675,8 @@ fn foreign_folder(volume: &str, link: &str, parent: NodeUid, name: &str) -> Node
     node
 }
 
-/// Recovering the root by uid is what lets the daemon mount offline
-/// (offline.md Phase 1): the uid is remembered in `sync_state`, the node
+/// Recovering the root by uid is what lets the daemon mount offline:
+/// the uid is remembered in `sync_state`, the node
 /// itself comes back out of `nodes`.
 #[test]
 fn node_by_uid_recovers_a_stored_node() {
@@ -796,7 +796,7 @@ fn children_if_listed_gated_on_flag() {
     assert_eq!(kids.len(), 2);
 }
 
-/// The shape of the `mv`-loses-the-file bug (bugs.md B1): a rename deletes the
+/// The shape of the `mv`-loses-the-file bug (`docs/BUGS.md` B1): a rename deletes the
 /// moved node's row, so a destination left marked `listed` is rebuilt from the DB
 /// without it — the file is gone from the source and absent from the destination,
 /// with `rename(2)` having reported success. Clearing the flag is what forces the
@@ -5735,7 +5735,7 @@ fn cache_eviction_candidates_are_lru_ordered_and_limited() {
     );
 }
 
-/// **The B5 checkpoint.** `improvements.md` P2.3 proposes concurrent SQLite
+/// **The B5 checkpoint.** A performance plan proposed concurrent SQLite
 /// reads, on the premise that the single `Mutex<Connection>` serializes the FUSE
 /// workers. This measures what the connection is actually asked to do now that
 /// B3 and B4 have landed, so the proposal is decided on evidence.
@@ -6291,7 +6291,7 @@ fn migration_v27_adds_the_access_deferral_column_to_a_v26_queue() {
 /// back with no nanosecond time. That `None` is the whole point: it makes the
 /// comparison fall back to whole seconds for rows written before the column
 /// existed, instead of asserting a sub-second time of zero and re-uploading
-/// every already-synced file in the folder (bugs.md B25).
+/// every already-synced file in the folder (`docs/BUGS.md` B25).
 #[test]
 fn migration_v28_adds_sub_second_local_times_without_disturbing_a_v27_baseline() {
     let path = std::env::temp_dir().join(format!(

crates/pdfs-core/src/db/trash.rs

@@ -102,5 +102,5 @@ impl Db {
         Ok(seen)
     }
 
-    // ---- device sync (devices.md) -----------------------------------------
+    // ---- device sync -----------------------------------------
 }

crates/pdfs-core/src/profile.rs

@@ -1,4 +1,4 @@
-//! The machine profile that travels with a device (features.md 5.3).
+//! The machine profile that travels with a device.
 //!
 //! Sync folder mappings, pins, and the settings that shape them live in
 //! `cache.db` and `config.json` — both on the local disk. When that disk dies,

crates/pdfs-core/src/syncignore.rs

@@ -1,4 +1,4 @@
-//! Selective-sync ignore rules for mirror folders (features.md 1.1).
+//! Selective-sync ignore rules for mirror folders.
 //!
 //! A mirror folder otherwise uploads every path beneath its root, which for a
 //! project directory means `node_modules/`, `.git/`, and `target/` — quota